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Je suis novice en programmation sous linux et je ne suis pas familier avec les fichiers makefiles puisque MSVC-Express cache très bien de telles choses. Mais maintenant je voulais jouer avec du code que j'ai trouvé, mais il ne sera pas compilé dans qtcreator. Mais avec le makefile dans le paquet je peux compiler et l'utiliser avec succès. Toutes les dépendances (bibliothèques et fichiers d'en-tête) doivent donc être correctement installées, mais dans le fichier .pro, il doit y avoir quelque chose qui manque.Makefile et QTCreator
Peut-être que certains sur peuvent m'aider et me donner quelques conseils sur la façon de trouver les paramètres manquants.
makefile travail:
# Defining the compiler:
CC = g++
CUDACC = nvcc
SRCPATH=src
OBJPATH=obj
LIBPATH=lib
BINPATH=bin
OPTIMIZATION_LEVEL=-O3
DEBUG= #-Wall -g #-pg
DEBUG_CUDA = #-g --ptxas-options=-v #-deviceemu
SWITCHES= -msse2 -flax-vector-conversions
nj_cuda : SWITCHES += -DENABLEGPU
INCLUDES= -Isrc/distanceCalculation -Isrc/bootstrapping -Isrc/
nj_cuda : INCLUDES += -I /usr/local/cuda/include -Isrc/distanceCalculation/gpu
#use -pg for gprof profiling in both steps
# Defining the object files:
objects = $(OBJPATH)/main.o $(OBJPATH)/node.o $(OBJPATH)/distMatrixReader.o $(OBJPATH)/sortedNJ.o $(OBJPATH)/polytree.o $(OBJPATH)/diskMatrix.o $(OBJPATH)/rapidDisk.o $(OBJPATH)/rdDataInitialiser.o $(OBJPATH)/sortedRedundantNJ.o $(OBJPATH)/rapidDiskRedundant.o $(OBJPATH)/rapidNJMem.o $(OBJPATH)/rapidNJMemRedundant.o $(OBJPATH)/simpleNJ.o $(OBJPATH)/testNJ.o $(OBJPATH)/distanceCalculation/dnaBitString.o $(OBJPATH)/distanceCalculation/dataloaderPhylip.o $(OBJPATH)/distanceCalculation/hammingDistance.o $(OBJPATH)/distanceCalculation/bitDistanceNoGap.o $(OBJPATH)/distanceCalculation/bitDistanceGap.o $(OBJPATH)/distanceCalculation/JCdistance.o $(OBJPATH)/distanceCalculation/simpleDistanceCalculator.o $(OBJPATH)/distanceCalculation/dataloader.o $(OBJPATH)/distanceCalculation/KimuraDistance.o $(OBJPATH)/distanceCalculation/bitDistance.o $(OBJPATH)/distanceCalculation/bitDistanceProtein.o $(OBJPATH)/distanceCalculation/bitDistanceProteinPopCnt.o $(OBJPATH)/distanceCalculation/bitDistanceGapPopCnt.o $(OBJPATH)/bootstrapping/bootstrapper.o
objects_cuda = $(OBJPATH)/distanceCalculation/gpu/distanceCalculatorDNA_gpu.o $(OBJPATH)/distanceCalculation/gpu/distanceCalculatorProtein_gpu.o
all: nj
echo all: make complete
nj: $(objects)
$(CC) $(DEBUG) $(SWITCHES) $(OPTIMIZATION_LEVEL) -lpthread -lboost_program_options -o $(BINPATH)/[email protected] $+
nj_cuda: $(objects_cuda) $(objects)
$(CUDACC) $(DEBUG_CUDA) $(OPTIMIZATION_LEVEL) -lpthread -lboost_program_options -o $(BINPATH)/[email protected] $+
$(OBJPATH)/%.o: $(SRCPATH)/%.cu
$(CUDACC) $(DEBUG_CUDA) $(INCLUDES) $(OPTIMIZATION_LEVEL) -o [email protected] -c $<
# compile to objectfiles
$(OBJPATH)/%.o: $(SRCPATH)/%.cpp
$(CC) $(DEBUG) $(SWITCHES) $(OPTIMIZATION_LEVEL) $(INCLUDES) -o [email protected] -c $<
# clean target
clean:
-rm $(OBJPATH)/*.o
-rm $(OBJPATH)/distanceCalculation/*.o
-rm $(OBJPATH)/bootstrapping/*.o
-rm $(BINPATH)/*
echo clean: make complete
release:
mkdir rapidNJ
cp -R src rapidNJ/
cp -R obj rapidNJ/
cp -R bin rapidNJ/
cp Makefile rapidNJ/
find . -name "*.~" -exec rm {} \;
zip rapidNJ.zip rapidNJ/INSTALL rapidNJ/Makefile rapidNJ/src/* rapidNJ/src/distanceCalculation/* rapidNJ/src/distanceCalculation/gpu/* rapidNJ/src/bootstrapping/* rapidNJ/obj rapidNJ/obj/distanceCalculation rapidNJ/obj/distanceCalculation/gpu rapidNJ/obj/bootstrapping rapidNJ/bin
rm -Rf rapidNJ/
util:
g++ -O3 src/distanceCalculation/sim_seq.cpp -o bin/sim_seq
#Make sure that make rebuilds files if included headers change:
$(objects): $(SRCPATH)/stdinclude.h $(SRCPATH)/sortedNJ.h $(SRCPATH)/polytree.h $(SRCPATH)/rapidDisk.h $(SRCPATH)/diskMatrix.h $(SRCPATH)/rdDataInitialiser.h $(SRCPATH)/distMatrixReader.hpp $(SRCPATH)/node.h $(SRCPATH)/sortedRedundantNJ.h $(SRCPATH)/rapidDiskRedundant.h $(SRCPATH)/rapidNJMem.h $(SRCPATH)/rapidNJMemRedundant.hpp $(SRCPATH)/simpleNJ.h $(SRCPATH)/testNJ.h $(SRCPATH)/distanceCalculation/dataloader.hpp $(SRCPATH)/distanceCalculation/hammingDistance.hpp $(SRCPATH)/distanceCalculation/bitDistanceNoGap.hpp $(SRCPATH)/distanceCalculation/bitDistanceGap.hpp $(SRCPATH)/distanceCalculation/dnaBitString.hpp $(SRCPATH)/distanceCalculation/JCdistance.hpp $(SRCPATH)/distanceCalculation/simpleDistanceCalculator.hpp $(SRCPATH)/distanceCalculation/dataloaderStockholm.hpp $(SRCPATH)/distanceCalculation/dataloaderPhylip.hpp $(SRCPATH)/distanceCalculation/KimuraDistance.hpp $(SRCPATH)/distanceCalculation/bitStringUtils.hpp $(SRCPATH)/distanceCalculation/bitDistance.hpp $(SRCPATH)/distanceCalculation/bitDistanceProtein.hpp $(SRCPATH)/distanceCalculation/dataloaderMemory.hpp $(SRCPATH)/distanceCalculation/bitDistanceProteinPopCnt.hpp $(SRCPATH)/distanceCalculation/bitDistanceGapPopCnt.hpp $(SRCPATH)/bootstrapping/bootstrapper.hpp $(SRCPATH)/distanceCalculation/gpu/constants.hpp
fichier .pro et makefile de QtCreator qui ne fonctionne pas:
#-------------------------------------------------
#
# Project created by QtCreator 2010-08-13T16:54:50
#
#-------------------------------------------------
QT += core
QT -= gui
TARGET = rapidNJ
CONFIG += console
CONFIG -= app_bundle
TEMPLATE = app
SOURCES += main.cpp \
distMatrixReader.cpp \
diskMatrix.cpp \
threadedNJ.cpp \
testNJ.cpp \
sortedRedundantNJ.cpp \
sortedNJ.cpp \
simpleNJ.cpp \
rdDataInitialiser.cpp \
rapidNJMemRedundant.cpp \
node.cpp \
ninjaComparator.cpp \
rapidNJMem.cpp \
rapidDiskRedundant.cpp \
rapidDisk.cpp \
polytree.cpp \
distanceCalculation/simpleDistanceCalculator.cpp \
distanceCalculation/sim_seq.cpp \
distanceCalculation/KimuraDistance.cpp \
distanceCalculation/JCdistance.cpp \
distanceCalculation/hammingDistance.cpp \
distanceCalculation/dnaBitString.cpp \
distanceCalculation/dataloaderPhylip.cpp \
distanceCalculation/dataloader.cpp \
distanceCalculation/bitDistanceProteinPopCnt.cpp \
distanceCalculation/bitDistanceProtein.cpp \
distanceCalculation/bitDistanceNoGap.cpp \
distanceCalculation/bitDistanceGapPopCnt.cpp \
distanceCalculation/bitDistanceGap.cpp \
distanceCalculation/bitDistance.cpp \
distanceCalculation/gpu/distanceCalculatorProtein_gpu.cu \
distanceCalculation/gpu/distanceCalculatorDNA_gpu.cu \
bootstrapping/bootstrapper.cpp
OTHER_FILES += \
#distMatrixReader.cpp%23 \
ninjaComparator.cpp~ \
Makefile \
rapidNJ.pro.user \
distanceCalculation/dataloaderMemory.hpp~
HEADERS += \
distMatrixReader.hpp \
diskMatrix.h \
cluster_pair.h \
threadedNJ.h \
testNJ.h \
stdinclude.h \
sortedRedundantNJ.h \
sortedNJ.h \
simpleNJ.h \
rdDataInitialiser.h \
rapidNJMemRedundant.hpp \
minFinder.h \
rapidNJMem.h \
rapidDiskRedundant.h \
rapidDisk.h \
polytree.h \
node.h \
distanceCalculation/simpleDistanceCalculator.hpp \
distanceCalculation/KimuraDistance.hpp \
distanceCalculation/JCdistance.hpp \
distanceCalculation/hammingDistance.hpp \
distanceCalculation/dnaBitString.hpp \
distanceCalculation/dataloaderStockholm.hpp \
distanceCalculation/dataloaderPhylip.hpp \
distanceCalculation/dataloaderMemory.hpp \
distanceCalculation/dataloader.hpp \
distanceCalculation/bitStringUtils.hpp \
distanceCalculation/bitDistanceProteinPopCnt.hpp \
distanceCalculation/bitDistanceProtein.hpp \
distanceCalculation/bitDistanceNoGap.hpp \
distanceCalculation/bitDistanceGapPopCnt.hpp \
distanceCalculation/bitDistanceGap.hpp \
distanceCalculation/bitDistance.hpp \
distanceCalculation/gpu/cutil_inline_runtime.h \
distanceCalculation/gpu/cutil_inline.h \
distanceCalculation/gpu/cutil_inline_drvapi.h \
distanceCalculation/gpu/cutil_inline_bankchecker.h \
distanceCalculation/gpu/cutil.h \
distanceCalculation/gpu/constants.hpp \
bootstrapping/bootstrapper.hpp
INCLUDEPATH += \
bootstrapping \
distanceCalculation \
/usr/include/boost/program_options \
/usr/include/boost
merci à l'avance
Vous devriez éditer votre question pour l'inclure si vous estimez que c'est important. –