Installation channelflow sur mon Mac OS X

Question

Je tente d'installer le channelflow logiciel sur mon Mac OS X à partir des instructions sur ce site http://channelflow.org/dokuwiki/doku.php?id=docs:install. Le site spécifie qu'il faut d'abord installer fftw3, eigen et hdf5 usong fink sur son système. J'ai installé avec succès fftw3 et eigen sur mon système mais je ne peux pas installer hdf5 en utilisant fink ('fink install hdf5' mentionne qu'il n'y a pas de paquet appelé hdf5). J'ai installé hdf5 en utilisant le miroir sur https://www.hdfgroup.org/downloads/index.html. Mais cela installé hdf5 dans usr/local alors que 'installation fink' s'installe dans/sw (je pense).

Maintenant, l'installation channelflow me donne l'erreur suivante.

MDOM18208-1:build kumarsambhava$ cmake -DCMAKE_INSTALL_PREFIX=~/channelflow ~/channelflow/trunk 

-- configuring channelflow version 1.5.1 
-- Build type: release 
-- Basic system introspection... 
-- Finding packages... 

-- Found FFTW 
-- FFTW_INCLUDE_DIR=/sw/include 
-- FFTW_LIBRARY=/sw/lib/libfftw3.dylib 
-- Adding /sw/include to include path... 
-- Adding /sw/lib/libfftw3.dylib to libraries... 
-- Found Eigen3 
-- EIGEN3_INCLUDE_DIR=/sw/include/eigen3 
-- Adding /sw/include/eigen3 to include path... 
-- Found HDF5 
-- HDF5 was not found. 
-- Adding HDF5_LIBRARY-NOTFOUND to libraries... 
-- Adding /libhdf5_cpp.so to libraries... 
CMake Error at CMakeLists.txt:129 (CHECK_LIBRARY_EXISTS): 
    CHECK_LIBRARY_EXISTS Macro invoked with incorrect arguments for macro 
    named: CHECK_LIBRARY_EXISTS 


CMake Error at CMakeLists.txt:135 (CHECK_LIBRARY_EXISTS): 
    CHECK_LIBRARY_EXISTS Macro invoked with incorrect arguments for macro 
    named: CHECK_LIBRARY_EXISTS 


-- LIBS=/sw/lib/libfftw3.dylib;HDF5_LIBRARY-NOTFOUND;/libhdf5_cpp.so 
-- INCLUDE_DIRS= 

CMake Error: The following variables are used in this project, but they are set to NOTFOUND. 
Please set them or make sure they are set and tested correctly in the CMake files: 
HDF5_INCLUDE_DIR (ADVANCED) 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/channelflow 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/channelflow 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/channelflow 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/channelflow 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/channelflow 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/channelflow 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/channelflow 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/channelflow 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/channelflow 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/channelflow 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/channelflow 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/programs 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/programs 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/programs 
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    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/examples 
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    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/examples 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/tests 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/tests 
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    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/tests 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/tests 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/tests 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/tests 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/tests 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/tests 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/tests 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/tests 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/tests 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/tests 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/tests 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/tests 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/tests 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/tests 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/tests 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/tests 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/data 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/data 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/data 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/data 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/data 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/data 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/data 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/data 
    used as include directory in directory /Users/kumarsambhava/channelflow/trunk/data 
HDF5_LIBRARY (ADVANCED) 
    linked by target "chflow_static" in directory /Users/kumarsambhava/channelflow/trunk/channelflow 
    linked by target "chflow" in directory /Users/kumarsambhava/channelflow/trunk/channelflow 
    linked by target "symmetryop" in directory /Users/kumarsambhava/channelflow/trunk/programs 
    linked by target "seriesdist" in directory /Users/kumarsambhava/channelflow/trunk/programs 
    linked by target "pressure" in directory /Users/kumarsambhava/channelflow/trunk/programs 
    linked by target "poincare" in directory /Users/kumarsambhava/channelflow/trunk/programs 
    linked by target "seriesdist2" in directory /Users/kumarsambhava/channelflow/trunk/programs 
    linked by target "perturbfield" in directory /Users/kumarsambhava/channelflow/trunk/programs 
    linked by target "findsoln" in directory /Users/kumarsambhava/channelflow/trunk/programs 
    linked by target "makestokesmode" in directory /Users/kumarsambhava/channelflow/trunk/programs 
    linked by target "makebasis" in directory /Users/kumarsambhava/channelflow/trunk/programs 
    linked by target "seriesprops" in directory /Users/kumarsambhava/channelflow/trunk/programs 
    linked by target "L2Dist" in directory /Users/kumarsambhava/channelflow/trunk/programs 
    linked by target "projectseries" in directory /Users/kumarsambhava/channelflow/trunk/programs 
    linked by target "continuesoln" in directory /Users/kumarsambhava/channelflow/trunk/programs 
    linked by target "findsymmetries" in directory /Users/kumarsambhava/channelflow/trunk/programs 
    linked by target "couettePoincare" in directory /Users/kumarsambhava/channelflow/trunk/programs 
    linked by target "movieframes" in directory /Users/kumarsambhava/channelflow/trunk/programs 
    linked by target "arnoldi" in directory /Users/kumarsambhava/channelflow/trunk/programs 
    linked by target "L2IP" in directory /Users/kumarsambhava/channelflow/trunk/programs 
    linked by target "continuefields" in directory /Users/kumarsambhava/channelflow/trunk/programs 
    linked by target "fieldprops" in directory /Users/kumarsambhava/channelflow/trunk/programs 
    linked by target "fieldplots" in directory /Users/kumarsambhava/channelflow/trunk/programs 
    linked by target "field2ascii" in directory /Users/kumarsambhava/channelflow/trunk/programs 
    linked by target "projectfields" in directory /Users/kumarsambhava/channelflow/trunk/programs 
    linked by target "couette" in directory /Users/kumarsambhava/channelflow/trunk/programs 
    linked by target "randomfield" in directory /Users/kumarsambhava/channelflow/trunk/programs 
    linked by target "makeheatmode" in directory /Users/kumarsambhava/channelflow/trunk/programs 
    linked by target "symmetrize" in directory /Users/kumarsambhava/channelflow/trunk/programs 
    linked by target "diffop" in directory /Users/kumarsambhava/channelflow/trunk/programs 
    linked by target "interpsoln" in directory /Users/kumarsambhava/channelflow/trunk/programs 
    linked by target "fieldconvert" in directory /Users/kumarsambhava/channelflow/trunk/programs 
    linked by target "changegrid" in directory /Users/kumarsambhava/channelflow/trunk/programs 
    linked by target "ascii2field" in directory /Users/kumarsambhava/channelflow/trunk/programs 
    linked by target "addfields" in directory /Users/kumarsambhava/channelflow/trunk/programs 

-- Configuring incomplete, errors occurred! 
See also "/Users/kumarsambhava/channelflow/build/CMakeFiles/CMakeOutput.log". 

Answer 1

Cmake ne trouve pas les bibliothèques hdf5. Pour résoudre ce problème ont un bref coup d'oeil à <your channelflow path>/trunk/CMakeList.txt:
Dans la ligne 116, 131, 136 et vous trouverez *.so bibliothèques codées en dur. Vous pouvez changer le suffixe *.dylib ou créer des liens symboliques dans les chemins de bibliothèque correspondants.